PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g089500.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 143aa    MW: 15177.4 Da    PI: 8.1652
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g089500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-061961440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        r+C+ + +     +C+ ++++lC+ C +  H        H++v
  Solyc02g089500.2.1 19 RVCDSCRSTACAVYCRADSSFLCAGCDTRMHAAnllasrHKRV 61
                        68******99*******************99657777778765 PP

2zf-B_box28.43.4e-0960106242
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         + ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp+
  Solyc02g089500.2.1  60 RVWICEACERSPAAFLCKADAASLCTSCDADIHSAsplacrHHRVPI 106
                         5789*****************************76999999877775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0541663IPR000315B-box-type zinc finger
SMARTSM003363.6E-101663IPR000315B-box-type zinc finger
CDDcd000212.13E-51963No hitNo description
PROSITE profilePS5011910.83659106IPR000315B-box-type zinc finger
PfamPF006433.5E-760106IPR000315B-box-type zinc finger
CDDcd000211.95E-762106No hitNo description
SMARTSM003362.2E-464106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MLKNENSGVF YGSRNNWSRV CDSCRSTACA VYCRADSSFL CAGCDTRMHA ANLLASRHKR  60
VWICEACERS PAAFLCKADA ASLCTSCDAD IHSASPLACR HHRVPIMTIL GSLYGPPAVE  120
TIGSGSIMIG GPTGESRRIM GS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4902520.0Lycopersicon esculentum CONSTANS 2 (CO2) gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561206.11e-74PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotO500552e-46COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLK4BCA11e-101K4BCA1_SOLLC; Uncharacterized protein
STRINGSolyc02g089500.2.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2695022
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-47CONSTANS-like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]